Package index
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PhytoCover() - Transform visually estimated species cover to cover-abundance values
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biodiversity() - Biodiversity indexes
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clustGroupAggregate() - Computation of means for cluster groups (aggregate)
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clustGroupAggregate2() - Computation of means for cluster groups (aggregate)
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clustOrder() - Individuation of the position and/or the group of appartenance of surveys in a dendrogram
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clustOrder_twspn() - Survey order and terminal groups of an ecan TWINSPAN classification
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denspe() - Matrix for cluster analysis with surveys labelled with the first species ordered by decreasing abundance
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denspe_twspn() - Label TWINSPAN Vegetation Surveys with Their Most Abundant Species
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ecological_indexes() - Computation of Ecological indicators (Landolt, Ellenberg) from vertical point-quadrat method surveys
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ecological_indexesPHYTO() - Computation of Ecological indicators (Landolt, Ellenberg) from phytosociological surveys
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export_synoptic() - Export a Phytosociological Synoptic Table to Excel
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first_ten_species() - First ten species for dendrogram
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first_ten_species_twspn() - Most abundant species per survey with TWINSPAN classification
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iPastoralist - iPastoralist: Tools for pastoralist survey analysis
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maxFusionLevel() - Identify the Optimal Number of Clusters Based on Maximum Fusion Height
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nameGroups() - Name vegetation groups based on dominant species
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pastoral_value() - Computation of Pastoral Value (PV)
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plotClustAggregate() - Plot dendrograms and (optionally) aggregated cluster summaries
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plotClustAggregate_twspn() - Fit TWINSPAN and plot its dendrogram using the iPastoralist layout
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synoptic_table() - Build a Synoptic Table of Diagnostic, Constant and Dominant Species
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tb_pca_plot() - Exploratory transformation-based PCA of vegetation communities
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twinspan_optimclass_ecan() - Select Vegetation Clusters Using Modified TWINSPAN and OptimClass
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vegetation_abundance() - Transform Frequency of occurrence (FO) to Species relative abundance (SRA) or Species percentage cover(%SC)